The Agent Skills Directory

[DATA_EXFILTRATION] (LOW): The skill provides an example of using curl to upload a structural file (query.pdb) to https://search.foldseek.com/api/ticket. While this is the official API for the tool, it involves sending potentially proprietary research data to a non-whitelisted external domain.
[COMMAND_EXECUTION] (SAFE): The Python implementation uses subprocess.run with a list of arguments rather than a shell string. This is a secure practice that prevents shell injection even if input parameters are untrusted.
[EXTERNAL_DOWNLOADS] (SAFE): The skill recommends installing software via conda from the bioconda and conda-forge channels. These are highly reputable and standard repositories within the scientific computing community.
[PROMPT_INJECTION] (LOW): The skill is susceptible to indirect prompt injection (Category 8).
Ingestion points: Processes external query.pdb files provided by the user or found in the environment.
Boundary markers: None specified for the input data or the resulting CSV output.
Capability inventory: Execution of the foldseek binary and reading resultant tabular data into pandas for further processing.
Sanitization: No sanitization of the PDB content or the tool's output is performed before it is presented back to the agent.

foldseek