biopython
Pass
Audited by Gen Agent Trust Hub on Feb 17, 2026
Risk Level: SAFE
Full Analysis
- SAFE (SAFE): No security issues detected. The skill consists of reference documentation for the Biopython library, a well-known and trusted library for biological data.
- PROMPT_INJECTION (SAFE): The skill documentation includes methods for reading external sequence files (FASTA, GenBank, Alignment files), which constitutes an indirect prompt injection surface. This is evaluated as SAFE because it is the primary, intended function of the library. * Ingestion points: SeqIO.parse() and AlignIO.read() are documented for reading external sequence data. * Boundary markers: Not present in the reference snippets. * Capability inventory: The skill documents capabilities for subprocess execution (ClustalOmegaCommandline) and file system operations (SeqIO.write). * Sanitization: Not applicable for these documentation snippets.
- COMMAND_EXECUTION (SAFE): The skill documents the use of Biopython's command-line wrappers for external tools like Clustal Omega and MUSCLE. This is a standard scientific use case and is considered safe within the context of biological sequence analysis.
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