bio-population-genetics-linkage-disequilibrium
Pass
Audited by Gen Agent Trust Hub on Feb 17, 2026
Risk Level: SAFE
Full Analysis
- Standard Command Execution (SAFE): The skill utilizes shell commands to interact with PLINK and VCFtools. All commands are standard bioinformatics workflows for calculating LD, pruning variants, and clumping GWAS results.
- Trusted Tooling (SAFE): The recommended installation methods use official package managers (conda, pip) and point to reputable sources (bioconda, PyPI) for well-known scientific software.
- Python Implementation (SAFE): Python code snippets use established libraries (scikit-allel, pandas, matplotlib) for data processing and visualization without any dynamic execution or network access beyond local file reading.
- Indirect Prompt Injection Surface (LOW): As a data processing skill, it ingests external genomic files (VCF, PLINK BED/BIM/FAM). While these represent ingestion points for untrusted data, the structured nature of these binary and text formats makes them highly resistant to prompt injection attacks against the agent.
- No Persistence or Exfiltration (SAFE): There are no attempts to modify system configurations, establish persistence, or transmit data to external servers.
Audit Metadata