bio-rna-quantification-alignment-free-quant
Pass
Audited by Gen Agent Trust Hub on Feb 17, 2026
Risk Level: SAFECOMMAND_EXECUTIONPROMPT_INJECTION
Full Analysis
- [Dynamic Execution] (LOW): The skill uses a Python heredoc in SKILL.md to generate and run a script for data aggregation. This is a low-risk pattern as it uses a static template and operates on local files.
- [Indirect Prompt Injection] (LOW): The skill processes untrusted external data. Evidence: 1. Ingestion points: reads quant.sf and abundance.tsv files in SKILL.md. 2. Boundary markers: absent. 3. Capability inventory: file-write (to_csv) in SKILL.md. 4. Sanitization: absent. The risk is low given the structured nature of the bioinformatics tool output.
- [Command Execution] (SAFE): Executes standard bioinformatics tools (Salmon, kallisto) and shell utilities (grep, sed) via CLI. No privilege escalation or suspicious shell commands were identified.
Audit Metadata