bio-workflows-methylation-pipeline
Pass
Audited by Gen Agent Trust Hub on Feb 16, 2026
Risk Level: LOW
Full Analysis
- General Security Posture (SAFE): The skill describes a legitimate scientific workflow for bisulfite sequencing data. Analysis of the shell commands and R scripts reveals no hidden malicious intent or unauthorized network access.
- Command Execution (INFO): The skill utilizes bash scripts to execute local bioinformatics utilities. This is expected behavior for a workflow-based tool. The commands use hardcoded or shell-defined variables in a manner consistent with standard pipeline automation.
- Data Processing (LOW): The skill ingests genomic data files (FASTQ, BAM, BED). While these are external inputs, they do not present an indirect prompt injection risk as they are processed by specific scientific parsers rather than being interpreted as instructions by the agent logic.
- Dependency Analysis (INFO): The skill references standard bioinformatics software (Bismark, Trim Galore, methylKit). It does not attempt to download these tools from untrusted remote sources during execution.
Audit Metadata