The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill downloads genomic reference data, model parameters, and software dependencies from trusted scientific sources.
gget setup alphafold: Downloads approximately 4GB of AlphaFold2 model parameters.
gget setup cellxgene: Installs the cellxgene-census Python package from standard registries.
gget setup elm: Downloads the local Eukaryotic Linear Motif database.
gget ref -d: Downloads reference genome files from Ensembl FTP servers using the system's curl utility.
[COMMAND_EXECUTION]: The tool utilizes standard system utilities for file downloads.
The gget ref module executes curl to handle large file transfers from genomic repositories when the download flag is active.
[DATA_EXFILTRATION]: Biological queries and sequences are transmitted to well-known external scientific databases to retrieve research information.
Integrated services include Ensembl (EMBL-EBI), NCBI, UniProt, RCSB PDB, ARCHS4, CZ CELLxGENE, Bgee, Open Targets, cBioPortal, and COSMIC.
gget gpt: Sends user prompts to OpenAI's API for text generation.
[CREDENTIALS_UNSAFE]: The skill documentation describes the use of authentication for specific services using placeholders.
gget gpt uses an OpenAI API key.
gget cosmic requires account credentials (email and password) for accessing the COSMIC database, which are provided as placeholders in the documentation.

gget