pysam
Pass
Audited by Gen Agent Trust Hub on Apr 9, 2026
Risk Level: SAFECOMMAND_EXECUTIONEXTERNAL_DOWNLOADS
Full Analysis
- [COMMAND_EXECUTION]: The skill documents the use of
pysam.samtoolsandpysam.bcftoolsto run bioinformatics command-line utilities. This functionality is intended for file manipulation tasks like sorting, indexing, and creating coverage tracks, which are primary features of the genomic toolkit. - [EXTERNAL_DOWNLOADS]: The skill references the installation of the
pysamlibrary from official Python package repositories, which is standard for technical skills of this nature. - [DATA_EXFILTRATION]: Analysis of the file access patterns shows that the skill focuses on local genomic data files (e.g., .bam, .vcf, .fasta). While the tool can read from standard input and write to standard output, no unauthorized exfiltration to external domains was detected.
- [SAFE]: The skill follows established bioinformatics conventions for coordinate systems and file management. All external references, such as the ReadTheDocs documentation, are to reputable and relevant service providers.
Audit Metadata