bioservices
Pass
Audited by Gen Agent Trust Hub on Feb 16, 2026
Risk Level: LOWEXTERNAL_DOWNLOADS
Full Analysis
- [EXTERNAL_DOWNLOADS] (LOW): Requires installation of 'bioservices' package (pip install bioservices). The source repository is github.com/cokelaer/bioservices, which is an established scientific project but not on the predefined trusted list.
- [DATA_EXPOSURE] (INFO): The NCBI BLAST functionality requires an email address as a parameter. This is a standard requirement for the NCBI API to contact users in case of service issues, but users should provide it consciously.
- [INDIRECT_PROMPT_INJECTION] (LOW): The skill fetches and processes data from external bioinformatics web services. * Ingestion points: kegg.parse_kgml_pathway() and kegg.get() in scripts/pathway_analysis.py. * Boundary markers: Absent; data is processed as raw strings or parsed XML/JSON. * Capability inventory: The script uses os.makedirs() and open() to write analysis results to a user-defined directory. * Sanitization: Absent; the script assumes the data returned by biological databases is well-formatted.
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