pysam
Pass
Audited by Gen Agent Trust Hub on Feb 17, 2026
Risk Level: SAFE
Full Analysis
- SAFE (SAFE): No security issues were identified in the reference documentation. The content provides standard usage examples for the pysam library.
- COMMAND_EXECUTION (SAFE): While pysam.samtools and pysam.bcftools are mentioned for indexing files, these are standard library wrappers for established bioinformatics utilities and are used as intended for genomic data processing.
- DATA_EXFILTRATION (SAFE): File operations are restricted to local data processing or standard streams (stdin/stdout) as part of the intended bioinformatics workflow and show no signs of exfiltration.
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