tooluniverse-phylogenetics
Pass
Audited by Gen Agent Trust Hub on Mar 29, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill implements standard phylogenetic metrics such as treeness, RCV, and DVMC using established bioinformatics libraries like PhyKIT, Biopython, and DendroPy.
- [EXTERNAL_DOWNLOADS]: All identified dependencies (phykit, biopython, dendropy, pandas, numpy, scipy) are well-known, industry-standard packages from the official Python Package Index (PyPI).
- [COMMAND_EXECUTION]: The provided scripts (scripts/format_alignment.py and scripts/tree_statistics.py) perform local file parsing, format conversion, and statistical calculations. No arbitrary shell execution or dangerous subprocess calls were found.
- [DATA_EXFILTRATION]: No network exfiltration patterns or unauthorized data access was detected. The skill operates on local bioinformatics data (FASTA/Newick) and provides optional integration with official genomics APIs (NCBI, Ensembl) via the platform's tool framework.
- [OBFUSCATION]: The code is clear, well-documented, and free of any obfuscation techniques like Base64-encoded payloads or hidden characters.
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