tooluniverse-spatial-transcriptomics
Pass
Audited by Gen Agent Trust Hub on Mar 8, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill defines a structured workflow for analyzing spatial transcriptomics data. All Python code snippets provided use legitimate, well-known open-source scientific libraries such as Scanpy, Squidpy, and Scikit-learn for data manipulation and visualization.
- [PROMPT_INJECTION]: The skill includes functions to ingest external datasets in Phase 1 (e.g., 10x Visium, MERFISH). The data ingestion points are restricted to structured scientific data formats processed by standard parsers (e.g.,
sc.read_visium). No mechanisms for executing instructions embedded within the data or bypassing agent safety filters were identified. - [EXTERNAL_DOWNLOADS]: The skill references the OmniPath database for ligand-receptor interactions. This interaction is facilitated via an internal tool call (
tu.run_one_function) to a biological reference service, which is a standard and safe operation in bioinformatics contexts.
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