biopython
Pass
Audited by Gen Agent Trust Hub on Mar 21, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill guides the user to install the official 'biopython' package from a standard Python registry using the 'uv pip' command. Biopython is a reputable and widely-used library in the scientific community.
- [SAFE]: Code examples provided for NCBI database access (Bio.Entrez) follow security best practices by using placeholders for sensitive information like email addresses and API keys, ensuring no actual credentials are exposed.
- [SAFE]: The inclusion of 'grep' command patterns for searching documentation is a standard utility for managing local reference files and does not involve unsafe command execution or privilege escalation.
- [SAFE]: Data processing functions (parsers for FASTA, GenBank, PDB, etc.) are standard library features used for structured biological data, with no evidence of unsafe interpolation or vulnerability to indirect prompt injection in the context provided.
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