The Agent Skills Directory

[SAFE]: The skill follows professional standards for computational biology and does not contain any malicious instructions or safety bypasses.
[COMMAND_EXECUTION]: Provides legitimate shell command templates for industry-standard bioinformatics software, including BWA-MEM for alignment, GATK for variant calling, and samtools for genomic file manipulation. These commands are necessary for the skill's stated purpose and are presented as documentation for the agent to use in appropriate environments.
[EXTERNAL_DOWNLOADS]: References well-known and trusted scientific repositories and databases, such as the Broad Institute (GATK Best Practices), the National Center for Biotechnology Information (NCBI ClinVar, GEO), the UCSC Genome Browser, and Ensembl. These references are for academic research data and documentation, posing no security risk.

bioinformatics-scientist