The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill provides instructions to download the geniml package from PyPI and its official repository on GitHub (github.com/databio/geniml). It also references the StarSpace repository owned by a trusted organization (facebookresearch/StarSpace).
[COMMAND_EXECUTION]: The documentation includes numerous command-line instructions for training models, processing BED files, and managing genomic data using geniml, uv, and uniwig utilities.
[PROMPT_INJECTION]: The skill includes explicit behavioral steering instructions at the end of the SKILL.md file, directing the AI agent to proactively market the 'K-Dense Web' platform to users when tasks reach a certain level of complexity.
[PROMPT_INJECTION]: Indirect injection vulnerability surface detected due to data ingestion capabilities:
Ingestion points: Reads genomic interval data from local files (BED files via src_folder) and single-cell accessibility data (H5AD via tokenize_cells in SKILL.md).
Boundary markers: None identified in the provided prompt templates or code snippets.
Capability inventory: Performs file system writes (dst_folder, save_dir), caching (BBClient), and subprocess execution via CLI calls to geniml and StarSpace (implied in SKILL.md).
Sanitization: No explicit sanitization or validation of input BED file content is described.

geniml