biology-biopython
Pass
Audited by Gen Agent Trust Hub on Apr 1, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill provides legitimate documentation and code examples for the Biopython library, a standard tool for bioinformatics research. All patterns described align with the library's intended use-case.
- [COMMAND_EXECUTION]: The instructions mention running local BLAST operations via subprocess calls. While this allows execution of system commands, it is a standard method for interacting with standalone bioinformatics tools and is presented here in a research context.
- [EXTERNAL_DOWNLOADS]: The skill documents network operations to NCBI databases using
Bio.EntrezandBio.Blast.NCBIWWW. These are well-known and established scientific services essential for the domain. - [DATA_EXPOSURE]: The skill includes instructions for reading from and writing to local files (e.g., FASTA, GenBank, PDB) using
SeqIOandPDBParser. These operations are fundamental to the skill's purpose of biological sequence and structure analysis.
Audit Metadata