rdkit
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biorxiv-database
Search and retrieve preprints from bioRxiv. Use when asked to "search bioRxiv", "find preprints", "look up bioRxiv papers", or retrieve life sciences literature.
28scikit-bio
Python bioinformatics library for sequence manipulation, alignments, phylogenetics, diversity metrics (Shannon, UniFrac), ordination (PCoA, CCA), statistical tests (PERMANOVA, Mantel), and biological file format I/O.
28pdb-database
Query and retrieve protein/nucleic acid structures from RCSB PDB. Use when you need to search the PDB database for structures or metadata. Supports text, sequence, and structure-based searches, coordinate downloads, and metadata retrieval for structural biology workflows.
28chembl-database
Query the ChEMBL database for bioactive compounds, drug targets, and bioactivity data. Use this skill when searching for small molecules, finding inhibitors for protein targets, or analyzing drug mechanisms of action.
28amina-init
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28alphafold-database
Query and retrieve AI-predicted protein structures from DeepMind's AlphaFold database. Fetch structures via UniProt accession, interpret pLDDT/PAE confidence scores, and access bulk proteome data for structural biology workflows.
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