Debugging with IntelliJ Debug MCP

This skill guides you through debugging applications via the IntelliJ Debug MCP server. The MCP server runs inside IntelliJ IDEA and gives you programmatic control over the debugger.

SAFETY RULES — Read These First

These rules prevent you from hanging indefinitely or losing debugging context. They exist because the debugged application can be suspended on a breakpoint at any time, which means it stops responding to all requests.

The Suspended-Process Trap

When the app hits a breakpoint, its threads freeze. Any HTTP request, curl call, or network interaction you make to that app will hang forever — the app can't respond until you resume it. This is the single most common mistake.

Rule 1: Always use timeouts when talking to the debugged app. Use --max-time 5 with curl, or set run_in_background: true on Bash tool calls. Do this even if you just checked that the app is running — it could hit a breakpoint between your check and your request.

Rule 2: Check suspension status before network calls. Call list_debug_sessions and look at isSuspended. If the app is suspended, either resume it first or accept your request will block.

Rule 3: Always verify position after stepping. After step_over, step_into, or step_out, call get_current_position. Never assume where execution landed — it might have jumped to an unexpected line or even a different file.

Rule 4: Check status after resume. After calling resume, the app may immediately hit another breakpoint. Always call list_debug_sessions or get_current_position to confirm whether the session is still running or suspended again.

Rule 5: Expression evaluation has side effects. evaluate_expression runs real code in the debugged JVM. Avoid expressions that modify state (like setters or System.exit(0)) unless that's specifically what you intend.

Getting Started

Before using any debug tool, initialize the session:

1. Call initialize with projectPath set to the absolute path of the project root
2. If you get "project not found", the response lists all open projects — pick the right one and retry
3. All subsequent tool calls are scoped to this project

Tool Reference

Session

Tool	Parameters
initialize	projectPath (string, required) — absolute path to project root

Run Configurations

Tool	Parameters
list_run_configurations	(none)
debug_run_configuration	configurationName (string, required) — exact name of the run config
list_debug_sessions	(none) — returns session names and isSuspended status
stop_debug_session	sessionName (string, required)

Breakpoints

Tool	Parameters
list_breakpoints	(none)
add_breakpoint	filePath (string, required), line (int, required, 1-based), condition (string, optional)
remove_breakpoint	filePath (string, required), line (int, required, 1-based)
toggle_breakpoint	filePath (string, required), line (int, required, 1-based), enabled (bool, optional — toggles if omitted)
set_breakpoint_condition	filePath (string, required), line (int, required, 1-based), condition (string, required — empty string removes)

Execution Control

Tool	Parameters
resume	sessionName (string, optional — defaults to first active session)
pause	sessionName (string, optional)
step_over	sessionName (string, optional)
step_into	sessionName (string, optional)
step_out	sessionName (string, optional)

Inspection

Tool	Parameters
get_current_position	sessionName (string, optional) — returns file, line, isSuspended
get_stack_trace	sessionName (string, optional) — returns frames with file, line, description
list_threads	sessionName (string, optional) — returns thread names and top frame info
evaluate_expression	expression (string, required), sessionName (string, optional), frameIndex (int, optional, 0-based, default 0)

Note: All line numbers in breakpoint tools are 1-based (matching what you see in source files). Use absolute file paths or paths relative to the project root.

Workflow: Investigate a Bug at a Known Location

Use this when you know roughly where the bug is (a specific file/method/line).

1. Read the source file to understand context around the suspicious area
2. add_breakpoint at the line you want to inspect (use condition if you only care about specific cases)
3. debug_run_configuration to start the app in debug mode
4. Trigger the bug — if via HTTP, remember: use --max-time 5 with curl or run_in_background: true
5. get_current_position — confirm the breakpoint was hit and you're at the expected line
6. evaluate_expression — inspect variables, call methods, check state. Start simple (variable names), then build up to more complex expressions
7. get_stack_trace — understand how execution reached this point
8. Decide: step_over/step_into to trace further, add_breakpoint elsewhere, or conclude
9. After each step, call get_current_position to confirm where you are
10. When done: resume or stop_debug_session, then remove_breakpoint to clean up

Workflow: Explore Runtime Behavior of Unknown Code

Use this when you need to understand how unfamiliar code actually executes.

1. list_run_configurations — find the right way to start the app
2. Set breakpoints at entry points (controller methods, main method, event handlers)
3. debug_run_configuration to start debugging
4. Trigger execution (HTTP request with timeout, CLI command, UI action described to user)
5. When suspended: get_stack_trace to see the full call chain
6. Use step_into to follow execution into methods, step_over to skip known code, step_out to return to callers
7. Use evaluate_expression liberally — inspect method arguments, return values, object fields
8. After each step: get_current_position to stay oriented

Expression Evaluation Tips

• Evaluation only works when the session is suspended on a breakpoint or after a step
• frameIndex lets you evaluate in different stack frames: 0 = current (top) frame, 1 = caller, etc.
• Start with simple variable names, then progress to method calls and complex expressions
• Be cautious with side-effect expressions — they run real code in the target JVM

Error Recovery

Error	What it means	What to do
"Session not found"	No session with that name, or no sessions running	list_debug_sessions to see what's available. May need to start a new one.
"Not suspended"	Session is running, not paused on a breakpoint	The breakpoint wasn't hit yet, or was already resumed. Wait for the trigger, or pause the session.
"Evaluator not available"	The current frame doesn't support evaluation	Try a different frameIndex. Native or framework frames often can't evaluate.
Session crash/disconnect	The debugged app crashed or was killed	Check IDE logs. list_debug_sessions to confirm. Start a new debug session.

After debugging is complete, clean up: remove_breakpoint for any breakpoints you added. Leaving breakpoints behind clutters future debug sessions.

Multiple Debug Sessions

When more than one debug session is active, always specify sessionName in your tool calls — otherwise the tools default to the first active session, which may not be the one you intend.

Call list_debug_sessions to discover all active sessions and their states before operating.

Known Limitations

• No console output access: The MCP server doesn't expose stdout/stderr from the debugged app. Workarounds: read log files directly, use evaluate_expression to check state, or ask the user what they see in the IDE console.
• No breakpoint-hit notifications: The server doesn't push events when a breakpoint is hit. After any action that might trigger a breakpoint (like resume, an HTTP request, or debug_run_configuration), check status with list_debug_sessions or get_current_position. Don't use timed polling — just check after each relevant action.