summarize-meeting
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next
Assess current project state and suggest the most valuable next action. The primary entry point for users who aren't sure what to do. Analyzes context, checks for issues, and recommends specific skills or actions.
4quarterly-review
Conduct a quarterly review of your overall research mission and direction. This is a user-level review stored in ~/.researchAssistant/. Use when the user types /quarterly_review, every 3 months, after major project milestones, or when questioning research direction.
4weekly-review
Conduct a weekly review of project progress and plan for the upcoming week. Use when the user types /weekly_review, when it's Monday and no review exists for this week, or at the end of the work week. Aggregates daily activity entries and identifies patterns.
4task
Rapid task capture without breaking flow. Use when the user types /task or wants to quickly add a todo item to tasks.md. Supports priority flags (!high, !low). Use this instead of /note for action items.
3wrap-up
End-of-day command to capture what happened, consolidate notes, and set up for tomorrow. Use when the user types /wrap_up, says "end of day", "wrapping up", or "done for the day". Gathers git activity, integrates /note entries, and creates a daily summary in activity.md.
3write-methods
Generate or update the methods section based on actual scripts in the pipeline. Links code directly to reproducible documentation. Use when the user types /write_methods, after completing scripts, when methods.md is out of sync with code, or before writing results.
3