exploratory-data-analysis

Malicious tool definition detected

Tool: SKILL.md [1/2] Description: --- name: exploratory-data-analysis description: Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics.

Tool: SKILL.md [2/2] Description: applications - **Python Libraries:** How to read it (with code examples) - **EDA Approach:** Specific analyses to perform **Example lookup:** ```markdown ### .pdb - Protein Data Bank **Description:** Standard format for 3D structures of biological macromolecules **Typical Data:** Atomic coordinates, residue information, secondary structure **Use Cases:** Protein structure analysis, molecular visualization, docking **Python Libraries:** - `Biopython`: `Bio.PDB` -

Malicious tool definition detected

Tool: assets/report_template.md Description: # Exploratory Data Analysis Report: {FILENAME} **Generated:** {TIMESTAMP} --- ## Executive Summary This report provides a comprehensive exploratory data analysis of the file `{FILENAME}`.

Malicious tool definition detected

Tool: references/bioinformatics_genomics_formats.md [1/3]

Tool: references/bioinformatics_genomics_formats.md [2/3]

Tool: references/bioinformatics_genomics_formats.md [3/3]

Malicious tool definition detected

Tool: references/chemistry_molecular_formats.md [1/3]

Tool: references/chemistry_molecular_formats.md [2/3]

Tool: references/chemistry_molecular_formats.md [3/3]

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Tool: references/general_scientific_formats.md [1/3]

Tool: references/general_scientific_formats.md [2/3]

Tool: references/general_scientific_formats.md [3/3]

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Tool: references/microscopy_imaging_formats.md [1/3]

Tool: references/microscopy_imaging_formats.md [2/3]

Tool: references/microscopy_imaging_formats.md [3/3]

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Tool: references/proteomics_metabolomics_formats.md [1/2]

Tool: references/proteomics_metabolomics_formats.md [2/2]

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Tool: references/spectroscopy_analytical_formats.md [1/3]

Tool: references/spectroscopy_analytical_formats.md [2/3]

Tool: references/spectroscopy_analytical_formats.md [3/3]

Malicious tool definition detected

Tool: scripts/eda_analyzer.py [1/2] Description: #!/usr/bin/env python3 """ Exploratory Data Analysis Analyzer Analyzes scientific data files and generates comprehensive markdown reports """ import os import sys from pathlib import Path from datetime import datetime import json def detect_file_type(filepath): """ Detect the file type based on extension and content.

Tool: scripts/eda_analyzer.py [2/2] Description: items = {} for key in group.keys(): path = f"{prefix}/{key}" if isinstance(group[key], h5py.Dataset): items[path] = { 'type': 'dataset', 'shape': group[key].shape, 'dtype': str(group[key].dtype) } elif isinstance(group[key], h5py.Group): items[path] = {'type': 'group'} items.update(get_structure(group[key], path)) return items results = { 'structure': get_structure(f), 'attributes': dict(f.attrs) } except ImportError as e: results['error'] = f"Req