The Agent Skills Directory

[COMMAND_EXECUTION]: The skill executes shell commands using uv run to launch Python scripts for molecular rendering.
[DYNAMIC_EXECUTION]: The skill operates by generating Python scripts from templates and executing them at runtime to perform specific visualization tasks.
[INDIRECT_PROMPT_INJECTION]: The skill processes external molecular structure files (e.g., .pdb, .cif) which represent an untrusted data ingestion surface.
Ingestion points: Structure files are loaded using the cmd.load() command within the generated Python scripts.
Boundary markers: No explicit boundary markers or 'ignore' instructions are provided when loading these external files.
Capability inventory: The skill utilizes subprocess execution via uv run and has the capability to read and write files on the local filesystem.
Sanitization: There is no explicit sanitization or validation of the structure file content prior to processing by the PyMOL engine.
[EXTERNAL_DOWNLOADS]: The skill downloads and installs the pymol-open-source-whl package via uv to provide the required molecular modeling libraries.

pymol