bio-read-alignment-hisat2-alignment
Pass
Audited by Gen Agent Trust Hub on Feb 16, 2026
Risk Level: LOWCOMMAND_EXECUTION
Full Analysis
- [COMMAND_EXECUTION] (LOW): The skill documents the use of HISAT2 and samtools for RNA-seq alignment. While it demonstrates shell loops and piping, these are standard operations for the tool's intended purpose and do not involve high-privilege operations or suspicious command structures.
- [DATA_EXFILTRATION] (SAFE): Analysis of the command templates shows no network operations (curl, wget) or access to sensitive system directories (e.g., ~/.ssh, ~/.aws). All operations are performed on local genomic data files.
- [EXTERNAL_DOWNLOADS] (SAFE): No remote scripts are downloaded or executed. The skill assumes necessary bioinformatics tools are already installed in the environment.
- [PROMPT_INJECTION] (SAFE): No instructions targeting the agent's behavior or safety guidelines (e.g., 'ignore previous instructions') were found in the documentation or metadata.
Audit Metadata