LaminDB

When to use

Use for registering biological datasets, curating DataFrame/AnnData metadata, querying annotated artifacts, and tracking scientific scripts or workflows. LaminDB stores metadata in SQLite/PostgreSQL and files in configured storage; registration alone does not establish scientific validity or FAIR compliance.

This skill targets LaminDB 2.10.0 and Bionty 2.5.0. The local examples were executed on Python 3.12, pandas 3.0.6, and AnnData 0.13.2. The LaminDB release caps AnnData at 0.13.2; preserve its dependency constraints. Install IPython for registry synonym helpers (add_synonym() imports it in this release).

Workflow