academic-deep-research
Audited by Runlayer on Feb 23, 2026
Malicious tool definition detected
Tool: .gitignore Description: # macOS .DS_Store # Editor files *.swp *.swo *~
Malicious tool definition detected
Tool: LICENSE [1/2] Description: Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1.
Tool: LICENSE [2/2] Description: in this License.
Malicious tool definition detected
Tool: README.md Description: # Academic Deep Research 🔬 **Transparent, rigorous, self-contained research** — not a black-box API wrapper.
Malicious tool definition detected
Tool: SKILL.md Description: --- name: academic-deep-research description: Transparent, rigorous research with full methodology — not a black-box API wrapper.
Malicious tool definition detected
Tool: VERSION
Malicious tool definition detected
Tool: example.md [1/2] Description: # Deep Research Example Workflow ## User Request > "I need to understand the current state of AI coding assistants. What's the landscape, who are the players, and what should I know if I'm choosing one for my team?" --- ## Phase 1: Initial Engagement **Clarifying Questions:** 1. What is the primary question or problem you're trying to solve — are you replacing an existing tool, or is this a first adoption? 2.
Tool: example.md [2/2] Description: security concerns with SOC 2 Type II certification and options for code isolation that prevent training data inclusion.
Malicious tool definition detected
Tool: quickref.md Description: # Deep Research Quick Reference ## Invocation - `/research` or mention "deep research" / "exhaustive analysis" ## Four Phases | Phase | User Action | Your Action | Key Output | |-------|-------------|-------------|------------| | 1.
Malicious tool definition detected
Tool: reference/citations-apa.md Description: # APA 7th Citations ## In-Text Examples ``` Recent research shows significant effects (Johnson et al., 2023).
Malicious tool definition detected
Tool: reference/error-handling.md Description: # Error Handling ## Insufficient Search Results 1.
Malicious tool definition detected
Tool: reference/parallel-research.md Description: # Parallel Research with sessions_spawn Use parallel sub-agents when themes are independent.
Malicious tool definition detected
Tool: reference/protocol.md Description: # Research Protocol ## Phase 1: Initial Engagement (STOP POINT) Before any research begins: - Ask 2–3 essential clarifying questions. - Reflect understanding back to the user.
Malicious tool definition detected
Tool: reference/quality-standards.md Description: # Evidence and Quality Standards ## Evidence Hierarchy 1.
Malicious tool definition detected
Tool: reference/report-template.md Description: # Final Report Template ``` # Research Report: [Topic] ## Executive Summary Two to three substantial paragraphs capturing the research question, primary findings, and confidence.
Malicious tool definition detected
Tool: reference/writing-style.md Description: # Writing Style Requirements ## Narrative Style (Final Report) - Flowing narrative prose only.