NV-Segment-CT Finetune

Purpose

• Used for smoke or dataset finetuning of NV-Segment-CT VISTA3D on CT NIfTI labels, including the upstream fixed-channel softmax workflow and optional MLflow tracking. Not for clinical validation.
• Wraps the upstream MONAI bundle entrypoint; do not replace it with handwritten training or inference code.
• Manifest inputs are dataset_dir, datalist, target_anatomy, label_mapping, smoke, sanity, auto_seg, softmax, skip_formal_eval, mlflow_tracking_uri, mlflow_experiment_name, and mlflow_run_name.
• Manifest outputs are finetuned_ckpt and schema-checked result_json.

Instructions