cellfate-pseudotime-gene-analysis
No SKILL.md available for this skill.
View on GitHubMore from starlitnightly/omicverse
data-viz-plots
Publication-quality matplotlib/seaborn plots: scatter, heatmap, violin, bar, line, multi-panel figures. Works with ANY LLM provider.
37data-stats-analysis
Perform statistical tests, hypothesis testing, correlation analysis, and multiple testing corrections using scipy and statsmodels. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
36single-cell-cellphonedb-communication-mapping
CellPhoneDB v5 ligand-receptor analysis, CellChatViz plots, and the newer ccc_heatmap / ccc_network_plot / ccc_stat_plot communication visualizations in OmicVerse.
35data-export-excel
Export analysis results, data tables, and formatted spreadsheets to Excel files using openpyxl. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
34bulk-rna-seq-differential-expression-with-omicverse
Bulk RNA-seq DEG pipeline: gene ID mapping, DESeq2 normalization, statistical testing, volcano plots, and pathway enrichment in OmicVerse.
34bulk-rna-seq-deconvolution-with-bulk2single
Turn bulk RNA-seq cohorts into synthetic single-cell datasets using omicverse's Bulk2Single workflow for cell fraction estimation, beta-VAE generation, and quality control comparisons against reference scRNA-seq.
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