fastq-analysis-pipeline
Pass
Audited by Gen Agent Trust Hub on Mar 10, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTION
Full Analysis
- [EXTERNAL_DOWNLOADS]: Automatically installs bioinformatics tools such as STAR, fastp, and samtools using conda or mamba when the tools are not found in the path. These installations target well-known repositories including Bioconda and Conda-forge.
- [EXTERNAL_DOWNLOADS]: Downloads genomic data from the NCBI Sequence Read Archive (SRA) using the prefetch and fqdump modules as part of the data acquisition workflow.
- [COMMAND_EXECUTION]: Executes standard bioinformatics command-line utilities for sequence processing and alignment via Python wrappers.
- [DATA_EXFILTRATION]: No evidence of unauthorized data exfiltration. Network access is restricted to legitimate research data acquisition and software dependency management from trusted sources.
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