biopython
Biopython - Bioinformatics Library
Industry-standard Python library for computational biology and bioinformatics workflows.
When to Use
- Parsing and manipulating biological sequences (DNA, RNA, protein)
- Reading and writing sequence files (FASTA, FASTQ, GenBank, EMBL, SwissProt)
- Performing sequence alignments (pairwise and multiple)
- Running and parsing BLAST searches
- Analyzing protein structures from PDB files
- Calculating sequence statistics and molecular weights
- Translating DNA to protein sequences
- Finding restriction enzyme sites
- Building and analyzing phylogenetic trees
- Accessing NCBI databases (Entrez, PubMed)
- Computing sequence motifs and patterns
- Analyzing next-generation sequencing data
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