Dokploy Docker Compose Deployment Skill

Overview

Dokploy is a self-hosted deployment platform that manages Docker containers on a VPS. It supports two compose modes (Docker Compose and Docker Stack) and requires specific patterns to work reliably.

Quick decision tree:

• Single-repo app with Dockerfile? → Application (Git) deployment
• Pre-built images or multi-service stack? → Compose deployment
• Need a public HTTPS domain? → Domains tab (Dokploy auto-injects Traefik labels)
• Need isolated networking per-app? → Enable Isolated Deployments in UI
• Config files needed without SSH? → File Mounts in Advanced → Mounts
• Complex stack needing generated configs + binary downloads? → Init Containers pattern

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Part 1: Service Types

Compose (Docker Compose mode)

Best for: multi-service stacks using pre-built images. Standard docker compose up behavior.

Key constraints vs running locally:

• Each deploy via AutoDeploy does a git clone which clears the repository directory — any relative path like ./config.yaml will be empty or missing after the first push
• Never use container_name: on services — it breaks Dokploy's logs, metrics, and monitoring features
• Relative bind mounts (./data) work only on first deploy; use ../files/ or named volumes instead

Stack (Docker Swarm mode)

Docker Stack mode for orchestrated deployments. Key differences from Compose mode:

• No build: directive — must use pre-built images from a registry
• Traefik labels must go under deploy.labels, not directly under labels
• Add --with-registry-auth flag in Advanced → Command if using private registries with replicas

Application (Git) Deployment

Best for: source code you build from a Dockerfile.

Steps: Create Service → Application → Source: Git → Build Type: Dockerfile → configure Volumes and Ports in Advanced.

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Part 2: Volume Strategy

⚠️ Critical Dokploy rule: Absolute host paths (e.g., /opt/myapp/) are cleaned up during deployments. Never use them. Use the ../files/ folder or named volumes instead.

Named Volumes (Best for databases and large data)

services:
  db:
    image: postgres:16
    volumes:
      - db-data:/var/lib/postgresql/data

volumes:
  db-data:

Docker manages these. Supports automated backups via Dokploy's Volume Backups feature. Best for databases, large datasets.

../files/ Bind Mounts (Best for config files and small data)

Dokploy provides a persistent ../files/ folder that survives deployments:

volumes:
  - ../files/my-config:/etc/myapp/config    ✅ persists across deploys
  - ../files/my-database:/var/lib/mysql     ✅ persists across deploys
  - ./config.yaml:/app/config.yaml          ❌ wiped on each AutoDeploy (git clone)
  - /opt/myapp/data:/app/data               ❌ absolute paths are cleaned up by Dokploy

No direct host file access needed. Best for config files, small datasets. No backup support.

Host path on the VPS: ../files/ maps to a files/ folder inside Dokploy's project directory on the host. To find the exact path after first deploy, SSH in and run:

# Step 1: find your container name (Dokploy names them <stack>-<service>-1)
docker ps --format "table {{.Names}}\t{{.Image}}" | grep <service-keyword>

# Step 2: inspect that container to see where ../files/ maps on the host
docker inspect <container-name> | grep -A2 '"Source"'

Or check the Docker tab in the Dokploy UI — the container name is listed there directly.

File Mounts (Dokploy UI — for pasting config content directly)

In Advanced → Mounts → Add Mount → File Mount:

• Content: paste the file text
• File Path: just the filename (e.g., config.yaml)
• Mount Path: full container path (e.g., /app/config/config.yaml)

✅ Best for: config files you want to manage entirely in Dokploy UI ❌ Not for: binary files, files needing runtime generation, files > a few KB

Init Container Pattern (for complex stacks needing generated configs)

When a stack needs multiple config files written at runtime, or binary downloads, use an alpine init container that writes files into a shared named volume before the main service starts:

services:
  my-conf:
    image: alpine:3.20
    command:
      - /bin/sh
      - -lc
      - |
        cat > /config/app.yaml <<'YAML'
        key: value
        YAML
        apk add --no-cache wget && wget -O /scripts/tool "https://..."
    volumes:
      - app-config:/config
      - app-scripts:/scripts
    restart: "no"   # MUST exit after running

  app:
    depends_on:
      my-conf:
        condition: service_completed_successfully
    volumes:
      - app-config:/etc/app/
      - app-scripts:/usr/local/scripts/

Shell escaping: Use $$ inside compose heredocs — $$(uname -s) not $(uname -s).

See references/init-container-patterns.md for complete examples.

Choosing the Right Volume Method

Need	Method
Database data	Named volume
Automated backups to S3	Named volume (only option)
Config file — manage in UI	File Mount
Config file — large or complex	../files/ bind mount
Generated configs + binaries	Init container → named volume
❌ Do NOT use	Absolute host paths, ./ relative paths

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Part 3: Environment Variables

How Dokploy handles env vars

Variables set in the Environment tab are written to a .env file in the same directory as docker-compose.yml. They are NOT automatically injected into containers. You must explicitly load them in your compose YAML using one of two approaches:

Option A — Load all variables (simpler for many vars):

services:
  app:
    env_file:
      - .env        # loads every variable from Dokploy's Environment tab

Option B — Select specific variables:

services:
  app:
    environment:
      - JWT_SECRET=${JWT_SECRET}
      - DATABASE_URL=${DATABASE_URL}
      - PORT=3000                   # hardcoded values also work

⚠️ If you use environment: with explicit variables, only those listed variables are passed. Any variable set in the UI but not listed here will be silently ignored.

Recommendation: For stacks with many secrets (LibreChat, etc.) use env_file: - .env on each service that needs them. For stacks where services need different subsets, use explicit ${VAR} refs.

Generate secure values

openssl rand -hex 32    # 64-char hex string (for keys like CREDS_KEY)
openssl rand -hex 16    # 32-char hex string (for IVs like CREDS_IV)

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Part 4: Domains & Traefik Routing

Dokploy uses Traefik as a reverse proxy. There are two ways to expose services via a domain.

Method 1: Dokploy Domains UI (Recommended — since v0.7.0)

Go to your service → Domains tab → Add Domain. Dokploy automatically injects the correct Traefik labels into your compose file at deploy time. You never touch the labels manually.

• Use expose: (not ports:) in your compose YAML when routing via domain
• Use Preview Compose button to see the final compose file with auto-injected labels

services:
  app:
    image: myapp:latest
    expose:
      - 3000    # container-only; Traefik routes via domain, no host port needed

Method 2: Manual Traefik Labels (Advanced)

For fine-grained control, add labels directly in your compose file. Requires connecting to dokploy-network (the shared Traefik network):

services:
  frontend:
    image: myapp:latest
    expose:
      - 3000
    networks:
      - dokploy-network
    labels:
      - traefik.enable=true
      - traefik.http.routers.my-unique-name.rule=Host(`app.yourdomain.com`)
      - traefik.http.routers.my-unique-name.entrypoints=websecure
      - traefik.http.routers.my-unique-name.tls.certResolver=letsencrypt
      - traefik.http.services.my-unique-name.loadbalancer.server.port=3000

networks:
  dokploy-network:
    external: true

For Docker Stack — labels go under deploy.labels:

services:
  frontend:
    image: myapp:latest
    deploy:
      labels:
        - traefik.enable=true
        - traefik.http.routers.my-app.rule=Host(`app.yourdomain.com`)
        - traefik.http.services.my-app.loadbalancer.server.port=3000
    networks:
      - dokploy-network

Isolated Deployments

Enable this in the Dokploy UI (toggle on the Compose service page) to give your stack its own private network instead of sharing dokploy-network. This is:

• Required when running multiple instances of the same app (e.g., two WordPress sites)
• Safer — services aren't visible across other stacks
• Automatic — Dokploy handles all network creation and Traefik wiring

When Isolated Deployments is enabled, you don't need to add dokploy-network manually. All open-source templates shipped with Dokploy have this enabled by default.

⚠️ If NOT using Isolated Deployments, only the domain-targeted service gets dokploy-network added automatically. Other services in the stack won't be on that network unless you add it manually.

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Part 5: Networking & DNS (EAI_AGAIN Fix)

The most common multi-service error:

getaddrinfo EAI_AGAIN mongodb

Container can't resolve another service's hostname. Causes: race condition or DNS confusion.

Fix 1 — Healthchecks + proper depends_on (prevents race conditions):

services:
  api:
    depends_on:
      mongodb:
        condition: service_healthy    # waits until healthy, not just started
  mongodb:
    healthcheck:
      test: ["CMD", "mongosh", "--eval", "db.adminCommand('ping')"]
      interval: 10s
      retries: 5
      start_period: 10s

Fix 2 — Explicit custom network (guarantees DNS between services):

networks:
  app-net:
    driver: bridge

services:
  api:
    networks: [app-net]
  mongodb:
    networks: [app-net]

⚠️ Avoid using container_name: as a DNS workaround — it breaks Dokploy monitoring features. Use service names for inter-container communication instead.

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Part 6: Healthchecks

Add a healthcheck to every dependency service (databases, caches, queues). Pair it with depends_on: condition: service_healthy on services that need them — this prevents race conditions where a service starts before its dependency is ready.

Example:

services:
  postgres:
    image: postgres:16
    healthcheck:
      test: ["CMD-SHELL", "pg_isready -U postgres"]
      interval: 10s
      timeout: 5s
      retries: 5
  app:
    depends_on:
      postgres:
        condition: service_healthy

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Part 7: Updating Deployed Services

Manual update (public repos you don't own)

1. Go to Deployments tab → Click Deploy
2. If Docker cache is stale: look for "Redeploy without Cache" or clear Build Cache in System Settings

Automatic updates via Webhook

1. Copy Webhook URL from Deployments tab
2. Add it to your GitHub/GitLab/Gitea repo Settings → Webhooks
3. Every push to the branch triggers an automatic deploy

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Part 8: Common Errors & Fixes

Error	Cause	Fix
getaddrinfo EAI_AGAIN <hostname>	Race condition / DNS	Add healthcheck + condition: service_healthy; use custom network
Config file empty after redeploy	./ relative path wiped by git clone	Use ../files/ bind mount or File Mount in UI
JwtStrategy requires a secret or key	JWT env var not injected	Add env_file: - .env or explicit - JWT_SECRET=${JWT_SECRET}; Redeploy (not Restart)
ENOENT: no such file or directory	Config file not mounted	Use File Mount in Advanced → Mounts, or ../files/ bind mount
permission denied on volume	Old volume from different user	Rename volume (e.g., data-v2) to force fresh creation
Container is unhealthy	Wrong healthcheck for image	Match healthcheck command to image type; see Part 6
Logs/metrics missing in Dokploy	container_name: set on service	Remove container_name: — it breaks Dokploy's monitoring
Services can't see each other after adding domain	Not on same network	Use Isolated Deployments, or manually add dokploy-network to all services

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Part 9: Reference Files

• references/sop-compose-deployment.md — step-by-step SOP for any multi-service Compose stack
• references/sop-git-deployment.md — deploying from Git with Dockerfile
• references/librechat-example.md — LibreChat: JWT secrets, MongoDB DNS, librechat.yaml mounting
• references/signoz-example.md — SigNoz: init containers, ClickHouse, Zookeeper migration
• references/init-container-patterns.md — init container patterns with heredocs and binary downloads
• references/healthchecks.md — healthcheck snippets for common services

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Quick Checklist: Adapting any docker-compose.yml for Dokploy

• Remove all container_name: — breaks Dokploy logs and metrics
• Replace ./ relative bind mounts with ../files/ or named volumes
• No absolute host paths (/opt/...) — they get cleaned up on deploy
• Remove user: "${UID}:${GID}" — causes permission errors in Dokploy
• Remove env_file: - ./.env — file won't exist; use env_file: - .env (no ./) or ${VAR} syntax
• Add env_file: - .env OR explicit ${VAR} refs for every secret — env vars aren't auto-injected
• Add healthchecks to all database/dependency services
• Update depends_on to use condition: service_healthy instead of just service name
• For domains: use Dokploy's Domains tab (Method 1) unless you need custom Traefik config
• Use expose: (not ports:) for services routed via Traefik domain
• Declare all named volumes at the bottom of the file