The Agent Skills Directory

[SAFE]: The skill provides educational examples and templates for research automation using well-known tools. All code snippets demonstrate standard usage patterns for Snakemake, Makefiles, and experiment tracking with MLflow.
[COMMAND_EXECUTION]: The skill includes shell commands for pipeline execution (e.g., snakemake, curl, latexmk). These are standard for the described purpose of workflow automation and do not involve untrusted input or suspicious targets.
[EXTERNAL_DOWNLOADS]: A Snakemake rule demonstrates downloading data via curl. The URL is sourced from a local config.yaml file, which is a standard and safe practice for data pipelines.
[PERSISTENCE_MECHANISMS]: The skill mentions cron jobs for scheduling tasks. This is presented as a standard automation technique for research data collection and is not used for malicious persistence.

research-workflow-automation